STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ76408.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (93 aa)    
Predicted Functional Partners:
lysS
lysine--tRNA ligase; KEGG: apr:Apre_0628 1.5e-285 lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II; Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.588
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.587
KWZ76411.1
TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.587
coaX-2
Putative pantothenate kinase, type III; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
       0.587
KWZ76407.1
KEGG: pfd:PFDG_01517 0.0099 hypothetical protein similar to selenophosphate synthetase; K01008 selenide, water dikinase.
       0.561
KWZ76406.1
Hypothetical protein; KEGG: hel:HELO_1001 0.0010 dnaA; chromosomal replication initiation protein K02313; Psort location: Cytoplasmic, score: 7.50.
       0.557
KWZ76404.1
BRO family protein.
       0.556
KWZ76403.1
TraG family protein.
       0.554
KWZ76405.1
Hypothetical protein; KEGG: edi:EDI_341030 0.00055 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 7.50.
       0.551
KWZ76413.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.454
Your Current Organism:
Anaerococcus tetradius
NCBI taxonomy Id: 33036
Other names: A. tetradius, ATCC 35098, CCM 3634, CCUG 17637, CCUG 46590, CIP 103927, DSM 2951, GIFU 7672, GIFU:7672, Gaffkya anaerobius, LMG 14264, LMG:14264, Peptostreptococcus tetradius, Tetracoccus anaerobius
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