pap protein (Ruminococcus gnavus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

pap

Unannotated protein. (511 aa)

Predicted Functional Partners:

ppk1

0.786

dnaG

0.553

CDL25_00515

0.535

CDL27_04595

0.462

CDL25_00485

0.441

CDL23_00360

0.441

sigA

0.441

CDL27_00475

0.412

GCA_900067245_01578

0.412

CDL23_10840

0.412

Your Current Organism:

Ruminococcus gnavus

NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDL23_00360	CDL25_00485	GCA_900067245_00316	GCA_900067245_00315	Unannotated protein.	Unannotated protein.	0.973
CDL23_00360	dnaG	GCA_900067245_00316	GCA_900067245_00318	Unannotated protein.	Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.720
CDL23_00360	pap	GCA_900067245_00316	GCA_900067245_00319	Unannotated protein.	Unannotated protein.	0.441
CDL23_00360	sigA	GCA_900067245_00316	GCA_900067245_00317	Unannotated protein.	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.840
CDL23_10840	pap	GCA_900067245_01660	GCA_900067245_00319	Unannotated protein.	Unannotated protein.	0.412
CDL25_00485	CDL23_00360	GCA_900067245_00315	GCA_900067245_00316	Unannotated protein.	Unannotated protein.	0.973
CDL25_00485	dnaG	GCA_900067245_00315	GCA_900067245_00318	Unannotated protein.	Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.701
CDL25_00485	pap	GCA_900067245_00315	GCA_900067245_00319	Unannotated protein.	Unannotated protein.	0.441
CDL25_00485	sigA	GCA_900067245_00315	GCA_900067245_00317	Unannotated protein.	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.810
CDL25_00515	CDL27_04595	GCA_900067245_00321	GCA_900067245_00320	Unannotated protein.	Unannotated protein.	0.807
CDL25_00515	pap	GCA_900067245_00321	GCA_900067245_00319	Unannotated protein.	Unannotated protein.	0.535
CDL27_00475	pap	GCA_900067245_00092	GCA_900067245_00319	Unannotated protein.	Unannotated protein.	0.412
CDL27_04595	CDL25_00515	GCA_900067245_00320	GCA_900067245_00321	Unannotated protein.	Unannotated protein.	0.807
CDL27_04595	pap	GCA_900067245_00320	GCA_900067245_00319	Unannotated protein.	Unannotated protein.	0.462
GCA_900067245_01578	pap	GCA_900067245_01578	GCA_900067245_00319	Unannotated protein.	Unannotated protein.	0.412
dnaG	CDL23_00360	GCA_900067245_00318	GCA_900067245_00316	Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Unannotated protein.	0.720
dnaG	CDL25_00485	GCA_900067245_00318	GCA_900067245_00315	Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Unannotated protein.	0.701
dnaG	pap	GCA_900067245_00318	GCA_900067245_00319	Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Unannotated protein.	0.553
dnaG	sigA	GCA_900067245_00318	GCA_900067245_00317	Unannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.958
pap	CDL23_00360	GCA_900067245_00319	GCA_900067245_00316	Unannotated protein.	Unannotated protein.	0.441