STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900067245_00546Unannotated protein. (269 aa)    
Predicted Functional Partners:
GCA_900067245_00548
Unannotated protein.
 
 0.991
GCA_900067245_00547
Unannotated protein.
 
 0.973
CDL25_11475
Unannotated protein.
 
 0.885
CDL27_14795
Unannotated protein.
 
 0.877
CDL25_14655
Unannotated protein.
 
 0.876
GCA_900067245_02514
Unannotated protein.
 
 0.876
GCA_900067245_01400
Unannotated protein.
 
   0.857
CDL18_07980
Unannotated protein.
 
 
 0.856
CDL20_07235
Unannotated protein.
 
   0.855
CDL24_03850
Unannotated protein; Belongs to the ABC transporter superfamily.
 
 0.849
Your Current Organism:
Ruminococcus gnavus
NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.