Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDL18_03325 | CDL27_01120 | GCA_900067245_00188 | GCA_900067245_01032 | Unannotated protein. | Unannotated protein. | 0.981 |
CDL18_03325 | nifS | GCA_900067245_00188 | GCA_900067245_03267 | Unannotated protein. | Unannotated protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.981 |
CDL24_09155 | CDL27_01120 | GCA_900067245_03266 | GCA_900067245_01032 | Unannotated protein. | Unannotated protein. | 0.746 |
CDL24_09155 | nifS | GCA_900067245_03266 | GCA_900067245_03267 | Unannotated protein. | Unannotated protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.977 |
CDL24_09155 | nifU | GCA_900067245_03266 | GCA_900067245_03268 | Unannotated protein. | Unannotated protein. | 0.790 |
CDL25_02605 | CDL27_01120 | GCA_900067245_01033 | GCA_900067245_01032 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein. | 0.828 |
CDL25_02605 | moaC | GCA_900067245_01033 | GCA_900067245_01038 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family. | 0.516 |
CDL25_02605 | prmA | GCA_900067245_01033 | GCA_900067245_01034 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.937 |
CDL25_02605 | thiI | GCA_900067245_01033 | GCA_900067245_01031 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.683 |
CDL27_01120 | CDL18_03325 | GCA_900067245_01032 | GCA_900067245_00188 | Unannotated protein. | Unannotated protein. | 0.981 |
CDL27_01120 | CDL24_09155 | GCA_900067245_01032 | GCA_900067245_03266 | Unannotated protein. | Unannotated protein. | 0.746 |
CDL27_01120 | CDL25_02605 | GCA_900067245_01032 | GCA_900067245_01033 | Unannotated protein. | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.828 |
CDL27_01120 | moaC | GCA_900067245_01032 | GCA_900067245_01038 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family. | 0.637 |
CDL27_01120 | nifS | GCA_900067245_01032 | GCA_900067245_03267 | Unannotated protein. | Unannotated protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.908 |
CDL27_01120 | nifU | GCA_900067245_01032 | GCA_900067245_03268 | Unannotated protein. | Unannotated protein. | 0.997 |
CDL27_01120 | prmA | GCA_900067245_01032 | GCA_900067245_01034 | Unannotated protein. | Unannotated protein; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.738 |
CDL27_01120 | selD | GCA_900067245_01032 | GCA_900067245_00721 | Unannotated protein. | Unannotated protein; Synthesizes selenophosphate from selenide and ATP. | 0.857 |
CDL27_01120 | thiI | GCA_900067245_01032 | GCA_900067245_01031 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.989 |
CDL27_01120 | yedF | GCA_900067245_01032 | GCA_900067245_00720 | Unannotated protein. | Unannotated protein; Belongs to the sulfur carrier protein TusA family. | 0.869 |
moaC | CDL25_02605 | GCA_900067245_01038 | GCA_900067245_01033 | Unannotated protein; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family. | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.516 |
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