Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDL18_07735 | CDL24_08610 | GCA_900067245_01087 | GCA_900067245_01079 | Unannotated protein; Belongs to the anti-sigma-factor antagonist family. | Unannotated protein. | 0.846 |
CDL18_07735 | sigF | GCA_900067245_01087 | GCA_900067245_01085 | Unannotated protein; Belongs to the anti-sigma-factor antagonist family. | Unannotated protein; Belongs to the sigma-70 factor family. | 0.941 |
CDL18_07735 | spoIIAB | GCA_900067245_01087 | GCA_900067245_01086 | Unannotated protein; Belongs to the anti-sigma-factor antagonist family. | Unannotated protein; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.998 |
CDL24_08610 | CDL18_07735 | GCA_900067245_01079 | GCA_900067245_01087 | Unannotated protein. | Unannotated protein; Belongs to the anti-sigma-factor antagonist family. | 0.846 |
CDL24_08610 | sigF | GCA_900067245_01079 | GCA_900067245_01085 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. | 0.759 |
CDL24_08610 | spoIIAB | GCA_900067245_01079 | GCA_900067245_01086 | Unannotated protein. | Unannotated protein; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.845 |
CDL27_00860 | rpoA | GCA_900067245_03708 | GCA_900067245_02643 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.925 |
CDL27_00860 | rpoB | GCA_900067245_03708 | GCA_900067245_02484 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.934 |
CDL27_00860 | rpoC | GCA_900067245_03708 | GCA_900067245_02485 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.924 |
CDL27_00860 | rpoZ | GCA_900067245_03708 | GCA_900067245_00192 | Unannotated protein. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.924 |
CDL27_00860 | sigF | GCA_900067245_03708 | GCA_900067245_01085 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. | 0.866 |
GCA_900067245_01333 | rpoA | GCA_900067245_01333 | GCA_900067245_02643 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.925 |
GCA_900067245_01333 | rpoB | GCA_900067245_01333 | GCA_900067245_02484 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.934 |
GCA_900067245_01333 | rpoC | GCA_900067245_01333 | GCA_900067245_02485 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.924 |
GCA_900067245_01333 | rpoZ | GCA_900067245_01333 | GCA_900067245_00192 | Unannotated protein. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.924 |
GCA_900067245_01333 | sigF | GCA_900067245_01333 | GCA_900067245_01085 | Unannotated protein. | Unannotated protein; Belongs to the sigma-70 factor family. | 0.866 |
GCA_900067245_02927 | rpoA | GCA_900067245_02927 | GCA_900067245_02643 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.925 |
GCA_900067245_02927 | rpoB | GCA_900067245_02927 | GCA_900067245_02484 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.934 |
GCA_900067245_02927 | rpoC | GCA_900067245_02927 | GCA_900067245_02485 | Unannotated protein. | Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.924 |
GCA_900067245_02927 | rpoZ | GCA_900067245_02927 | GCA_900067245_00192 | Unannotated protein. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.924 |
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