STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL25_13955Unannotated protein. (273 aa)    
Predicted Functional Partners:
GCA_900067245_01277
Unannotated protein.
   
 0.947
CDL27_03905
Unannotated protein.
 
    
0.904
CDL27_00400
Unannotated protein.
 
     
0.899
CDL23_11800
Unannotated protein.
 
     
0.899
phnX
Unannotated protein; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
 
   
 0.875
phnW
Unannotated protein; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily.
 
     0.871
CDL25_00465
Unannotated protein.
 
 0.837
GCA_900067245_02577
Unannotated protein.
  
 
 0.827
modB
Unannotated protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
      0.810
GCA_900067245_02579
Unannotated protein.
  
 
 0.808
Your Current Organism:
Ruminococcus gnavus
NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.