STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL25_15475Unannotated protein. (314 aa)    
Predicted Functional Partners:
CDL23_05200
Unannotated protein.
 0.999
CDL18_04675
Unannotated protein.
 0.999
GCA_900067245_01577
Unannotated protein.
 
 0.994
CDL25_13815
Unannotated protein; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.939
CDL27_12160
Unannotated protein.
 
 
 0.938
CDL27_14935
Unannotated protein.
 
    0.937
fsa
Unannotated protein; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 
 0.924
CDL18_04680
Unannotated protein.
  
  
 
0.915
rpiB
Unannotated protein.
  
 
 0.914
pgi
Unannotated protein; Belongs to the GPI family.
     
 0.906
Your Current Organism:
Ruminococcus gnavus
NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.