STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsDUnannotated protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (137 aa)    
Predicted Functional Partners:
rbsK
Unannotated protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 
 0.985
CDL27_03885
Unannotated protein.
 
  
 0.974
rbsC
Unannotated protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.968
rbsA-2
Unannotated protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
  
 0.932
GCA_900067245_01695
Unannotated protein.
 
 
 0.908
CDL23_03355
Unannotated protein.
 
  
 0.856
CDL20_04490
Unannotated protein.
 
  
 0.828
CDL27_03860
Unannotated protein.
 
  
 0.818
GCA_900067245_01705
Unannotated protein.
 
  
 0.801
CDL23_03335
Unannotated protein.
 
  
 0.758
Your Current Organism:
Ruminococcus gnavus
NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.