STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL18_04440Unannotated protein. (165 aa)    
Predicted Functional Partners:
CDL25_10140
Unannotated protein.
 
     0.843
CDL18_02325
Unannotated protein.
  
     0.732
CDL26_07400
Unannotated protein.
  
     0.656
CDL18_09850
Unannotated protein.
  
     0.638
CDL23_10445
Unannotated protein.
  
     0.629
CDL25_05220
Unannotated protein.
  
     0.615
CDL20_12620
Unannotated protein; Belongs to the ABC transporter superfamily.
       0.566
CDL20_05905
Unannotated protein.
  
     0.557
CDL18_01380
Unannotated protein.
  
     0.547
CDL18_13370
Unannotated protein.
  
     0.513
Your Current Organism:
Ruminococcus gnavus
NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.