STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL25_06860Unannotated protein. (308 aa)    
Predicted Functional Partners:
CDL27_08785
Unannotated protein.
 
   
0.916
CDL27_06315
Unannotated protein.
  
   0.868
CDL24_02540
Unannotated protein.
 
   
0.744
def
Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.732
CDL27_12715
Unannotated protein.
 
  
0.730
CDL25_06840
Unannotated protein.
 
     0.591
GCA_900067245_02286
Unannotated protein.
 
   0.589
CDL25_07270
Unannotated protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
   
0.588
CDL25_06985
Unannotated protein.
  
     0.584
GCA_900067245_00597
Unannotated protein.
  
    0.550
Your Current Organism:
Ruminococcus gnavus
NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.