STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL27_12670Unannotated protein. (686 aa)    
Predicted Functional Partners:
CDL18_03575
Unannotated protein; Belongs to the SEDS family.
 
 0.833
CDL18_10615
Unannotated protein; Belongs to the SEDS family.
 
 0.825
CDL23_10025
Unannotated protein; Belongs to the SEDS family.
 
 0.793
CDL18_04940
Unannotated protein.
       0.732
CDL23_09970
Unannotated protein.
  
 
 0.681
CDL27_00760
Unannotated protein; Belongs to the SEDS family.
 
 0.648
CDL25_01740
Unannotated protein.
 
 
 0.582
CDL20_07910
Unannotated protein.
 
 
 0.581
mreC
Unannotated protein; Involved in formation and maintenance of cell shape.
 
 
 0.572
trxA
Unannotated protein; Belongs to the thioredoxin family.
  
   0.570
Your Current Organism:
Ruminococcus gnavus
NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.