STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL27_08885Unannotated protein. (661 aa)    
Predicted Functional Partners:
CDL20_04020
Unannotated protein.
 
 
 0.978
CDL27_05935
Unannotated protein.
 
  
 0.811
GCA_900067245_02824
Unannotated protein.
 
  
 0.796
CDL27_05940
Unannotated protein.
 
    0.787
CDL24_02540
Unannotated protein.
 
 0.714
CDL27_13640
Unannotated protein.
 
  
 0.689
CDL27_14505
Unannotated protein.
 
    0.562
CDL27_08895
Unannotated protein.
       0.487
Your Current Organism:
Ruminococcus gnavus
NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.