STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL27_10000Unannotated protein. (873 aa)    
Predicted Functional Partners:
GCA_900067245_03114
Unannotated protein.
 
 
 0.519
GCA_900067245_03428
Unannotated protein.
  
 
 0.458
CDL20_13480
Unannotated protein.
  
    0.452
sdaAA
Unannotated protein; Belongs to the iron-sulfur dependent L-serine dehydratase family.
  
    0.439
sdaAB
Unannotated protein; Belongs to the iron-sulfur dependent L-serine dehydratase family.
       0.437
Your Current Organism:
Ruminococcus gnavus
NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.