STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDL18_11185Unannotated protein. (407 aa)    
Predicted Functional Partners:
cysK
Unannotated protein; Belongs to the cysteine synthase/cystathionine beta- synthase family.
    
 0.924
CDL27_09955
Unannotated protein.
     
 0.918
CDL26_11610
Unannotated protein.
   
 0.917
CDL27_04755
Unannotated protein.
   
 0.915
CDL18_00885
Unannotated protein.
 
  
0.913
CDL27_08545
Unannotated protein.
    
 0.903
luxS
Unannotated protein; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.
     
  0.900
CDL20_05990
Unannotated protein; Belongs to the peptidase M17 family.
  
 
  0.810
CDL25_04345
Unannotated protein.
    
 0.809
CDL26_02260
Unannotated protein.
    
 0.809
Your Current Organism:
Ruminococcus gnavus
NCBI taxonomy Id: 33038
Other names: ATCC 29149, VPI C7-9, [. gnavus, [Ruminococcus] gnavus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.