STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900005695_00571Unannotated protein. (73 aa)    
Predicted Functional Partners:
rnc
Unannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.688
arnB
Unannotated protein; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.537
nadE
Unannotated protein; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
  0.456
acsA
Unannotated protein; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.446
GCA_900005695_00543
Unannotated protein.
  
  
  0.440
GCA_900005695_00054
Unannotated protein.
  
  
  0.438
GCA_900005695_00203
Unannotated protein.
  
  
  0.435
tme
Unannotated protein.
    
 0.428
dme
Unannotated protein.
    
 0.428
GCA_900005695_01703
Unannotated protein.
    
 0.428
Your Current Organism:
Bartonella doshiae
NCBI taxonomy Id: 33044
Other names: ATCC 700133, B. doshiae, CCUG 50770, CIP 107026, NCTC 12862, strain R18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.