STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPB34835.1Orotidine-5'-phosphate decarboxylase; IMG locus_tag: Btaycd_011240; Belongs to the OMP decarboxylase family. Type 2 subfamily. (281 aa)    
Predicted Functional Partners:
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
 
 0.996
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
   
 
 0.971
carB
Carbamoyl-phosphate synthase large subunit; IMG locus_tag: Btaycd_011270; Belongs to the CarB family.
 
  
 0.971
pyrD
Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
 
 0.941
pyrB
Aspartate carbamoyltransferase; IMG locus_tag: Btaycd_004290; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
  
 0.907
OPB35533.1
Dihydroorotase; IMG locus_tag: Btaycd_003820.
  
  
 0.739
OPB35521.1
Dihydroorotase; IMG locus_tag: Btaycd_004300.
  
  
 0.739
cmk
Cytidylate kinase; IMG locus_tag: Btaycd_000220.
    
 0.655
gatA
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferasesubunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
  
    0.535
pheT
phenylalanyl-tRNA synthetase beta subunit; IMG locus_tag: Btaycd_000310; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
  
 0.511
Your Current Organism:
Bartonella taylorii
NCBI taxonomy Id: 33046
Other names: B. taylorii, Bartonella sp. CCT14, Bartonella sp. CCT26, CCUG 50774, CIP 107028, NCTC 12861, strain M6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.