STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALH79234.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)    
Predicted Functional Partners:
ALH79230.1
DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.819
ALH82550.1
DNA primase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.777
ALH82541.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.776
ALH81576.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.773
ALH81326.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.738
ALH81582.1
Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.723
ALH81583.1
Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.717
ALH81322.1
Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.713
ALH81584.1
Virulence-associated protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.711
ALH79730.1
Methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.704
Your Current Organism:
Sphingopyxis macrogoltabida
NCBI taxonomy Id: 33050
Other names: ATCC 51380, CIP 104196, DSM 8826, IFO 15033, JCM 10192, LMG 17324, LMG:17324, NBRC 15033, S. macrogoltabida, Sphingomonas macrogolitabida, Sphingomonas macrogoltabidus, strain 203
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.