STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALH82267.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)    
Predicted Functional Partners:
ALH82266.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.920
ALH80089.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.858
ALH79495.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.664
ALH79990.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.664
ALH80063.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.664
ALH80144.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.664
ALH80397.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.664
ALH80909.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.664
ALH81309.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.664
ALH81543.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.664
Your Current Organism:
Sphingopyxis macrogoltabida
NCBI taxonomy Id: 33050
Other names: ATCC 51380, CIP 104196, DSM 8826, IFO 15033, JCM 10192, LMG 17324, LMG:17324, NBRC 15033, S. macrogoltabida, Sphingomonas macrogolitabida, Sphingomonas macrogoltabidus, strain 203
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