Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
SB4_01805TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (799 aa)    
Predicted Functional Partners:
SB4_01795
RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.951
SB4_01800
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.949
SB4_06620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.816
SB4_02495
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.712
SB4_10675
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.669
SB4_06375
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.661
SB4_08655
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.655
SB4_07810
Vgr related protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.647
SB4_02490
RNA polymerase sigma-70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.639
SB4_04775
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.633
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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