Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_01985Peptidase M48; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)    
Predicted Functional Partners:
SB4_01980
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.901
SB4_12225
Metalloendopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.722
SB4_11685
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.716
SB4_01975
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.696
SB4_01970
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.693
SB4_15510
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.683
rne
Ribonuclease; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
 
     0.650
SB4_17500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.627
SB4_11690
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.573
SB4_01830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.566
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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