Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_02000N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)    
Predicted Functional Partners:
SB4_12225
Metalloendopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.906
SB4_02020
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.816
SB4_15510
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.802
SB4_03355
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.787
SB4_12170
Carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.787
SB4_09595
Cell envelope biogenesis protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
   0.775
SB4_09760
Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.763
SB4_09095
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.726
SB4_12450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.683
SB4_15755
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.652
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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