Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
SB4_02365Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)    
Predicted Functional Partners:
SB4_08125
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.668
SB4_07955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.611
tatA
Preprotein translocase subunit TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
     0.595
SB4_05835
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.563
SB4_12040
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.521
SB4_01525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.493
SB4_12445
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.488
SB4_01895
Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.472
SB4_12685
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.457
SB4_12805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.454
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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