Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_02635Tryptophan halogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (508 aa)    
Predicted Functional Partners:
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
 
 0.942
SB4_02640
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.894
SB4_02620
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.831
SB4_17105
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.825
SB4_02630
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.789
SB4_02625
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.777
SB4_01820
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.769
SB4_17325
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.769
SB4_01825
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.766
SB4_17310
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.762
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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