SB4_03340 protein (Sphingomonas sanguinis) - STRING interaction network

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SB4_03340

Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (68 aa)

Predicted Functional Partners:

carB

0.773

SB4_03335

0.571

greA

0.532

SB4_03355

0.532

Your Current Organism:

Sphingomonas sanguinis

NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SB4_03335	SB4_03340	SB4_03335	SB4_03340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.571
SB4_03335	SB4_03355	SB4_03335	SB4_03355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
SB4_03335	carB	SB4_03335	SB4_03345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarB family.	0.571
SB4_03335	greA	SB4_03335	SB4_03350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	0.406
SB4_03340	SB4_03335	SB4_03340	SB4_03335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.571
SB4_03340	SB4_03355	SB4_03340	SB4_03355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
SB4_03340	carB	SB4_03340	SB4_03345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarB family.	0.773
SB4_03340	greA	SB4_03340	SB4_03350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	0.532
SB4_03355	SB4_03335	SB4_03355	SB4_03335	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.406
SB4_03355	SB4_03340	SB4_03355	SB4_03340	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.532
SB4_03355	carB	SB4_03355	SB4_03345	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarB family.	0.661
SB4_03355	greA	SB4_03355	SB4_03350	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	0.874
carB	SB4_03335	SB4_03345	SB4_03335	Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarB family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.571
carB	SB4_03340	SB4_03345	SB4_03340	Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarB family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
carB	SB4_03355	SB4_03345	SB4_03355	Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarB family.	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.661
carB	greA	SB4_03345	SB4_03350	Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarB family.	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	0.821
greA	SB4_03335	SB4_03350	SB4_03335	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.406
greA	SB4_03340	SB4_03350	SB4_03340	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.532
greA	SB4_03355	SB4_03350	SB4_03355	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
greA	carB	SB4_03350	SB4_03345	Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarB family.	0.821

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