Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_03400glutaryl-7-ACA acylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (654 aa)    
Predicted Functional Partners:
SB4_04715
Aminopeptidase precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.722
SB4_09855
Peptidase M61; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.720
SB4_03915
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.567
SB4_12490
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.554
SB4_10890
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.489
SB4_03395
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.483
SB4_17255
Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.476
SB4_14560
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
       0.474
SB4_03405
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.461
SB4_04770
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.459
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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