STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SB4_04485Nickel uptake transporter family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)    
Predicted Functional Partners:
SB4_04480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.988
SB4_04475
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.961
SB4_04490
Hypothetical protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
    0.955
SB4_04465
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.811
SB4_04470
Fe(II)-dependent oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.807
SB4_01370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.700
SB4_18755
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.520
SB4_01805
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.443
SB4_06395
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.438
SB4_02500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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