Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_04730ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)    
Predicted Functional Partners:
SB4_04735
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.996
SB4_04740
Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.973
SB4_04745
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.969
SB4_01975
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.826
SB4_01405
cob(II)yrinic acid a,c-diamide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.523
SB4_04115
Malonic semialdehyde reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.523
SB4_16450
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.523
ctaA
Heme A synthase; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
    
  0.456
SB4_06140
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.438
SB4_01965
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.436
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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