STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SB4_06140Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)    
Predicted Functional Partners:
SB4_06145
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
SB4_06150
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
SB4_04900
5-oxoprolinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.577
SB4_06155
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.571
SB4_18395
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.513
SB4_06160
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.471
SB4_17030
methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.448
SB4_03690
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.438
SB4_04730
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.436
SB4_11315
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.420
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.