Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_07560Family 31 glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family. (690 aa)    
Predicted Functional Partners:
SB4_07555
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.634
SB4_05325
Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
  
     0.633
rpsG
30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
   
   0.585
SB4_05550
Redoxin family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.577
SB4_12130
Alkyl hydroperoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.577
SB4_09165
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
    
   0.576
SB4_16580
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.575
SB4_17255
Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.575
SB4_02665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.566
SB4_18490
Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.566
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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