Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_07660Type II secretion system protein N; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)    
Predicted Functional Partners:
SB4_07640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.872
SB4_07645
Type II secretory pathway protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.872
SB4_07650
General secretion pathway protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.872
SB4_07655
General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.872
SB4_07635
General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.701
SB4_07630
General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.615
SB4_07625
General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.577
SB4_07620
General secretion pathway protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.557
SB4_07615
General secretion pathway protein GspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
       0.536
SB4_07605
Type II secretory protein PulC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.473
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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