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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SB4_08075Iron transporter FeoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)    
Predicted Functional Partners:
SB4_08080
Iron transporter FeoB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.997
SB4_08070
RpsU-divergently transcribed; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.794
SB4_08065
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.774
SB4_08085
Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.742
SB4_08090
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.626
SB4_08060
N-ethylmaleimide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.551
SB4_16095
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.447
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.435
SB4_15160
Cystathionine beta-lyase; Catalyzes the formation of L-homocysteine from cystathionine; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.434
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
   
    0.414
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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