Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_08210ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)    
Predicted Functional Partners:
SB4_08215
Transmembrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.800
SB4_08220
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.758
SB4_17250
Translation initiation factor IF-2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.642
SB4_06785
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex.
   
   0.595
SB4_08225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.578
SB4_13080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.564
SB4_02870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.458
SB4_00595
Patatin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.447
SB4_02165
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.444
SB4_08230
Bacteriophage N4 adsorption protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.426
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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