Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SB4_08445Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (780 aa)    
Predicted Functional Partners:
SB4_03295
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.898
SB4_16095
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.859
SB4_08090
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.852
SB4_00840
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.812
SB4_16105
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.760
SB4_11435
Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.759
SB4_10715
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.740
SB4_03730
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.666
SB4_05800
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.660
SB4_16100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.631
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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