Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
SB4_08770Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)    
Predicted Functional Partners:
SB4_08765
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.853
SB4_04890
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.661
SB4_11320
Linalool 8-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.
  
  0.647
SB4_10890
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.630
SB4_05230
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.610
SB4_14030
Transmembrane protein EpsH; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.580
SB4_04770
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.560
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.559
SB4_07580
Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.529
ppnK
Inorganic polyphosphate kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
     
  0.508
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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