STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SB4_089101,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (375 aa)    
Predicted Functional Partners:
SB4_08915
Glycosyl hydrolase 43 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
     0.803
SB4_01590
Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.526
SB4_02520
Tat pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
SB4_02435
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.521
SB4_07580
Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.501
SB4_18555
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.490
SB4_09380
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.474
SB4_04860
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.466
SB4_03375
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.465
SB4_02510
alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.433
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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