Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_08945Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)    
Predicted Functional Partners:
SB4_08950
Pyridoxal 4-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.972
SB4_08940
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.946
SB4_08935
D-mannonate oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.841
SB4_08955
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.814
SB4_08960
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.804
SB4_08965
Fucose permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.775
SB4_18375
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.644
SB4_18440
2-keto-3-deoxygluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.619
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
    
 0.614
SB4_08920
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.599
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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