Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_08960Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)    
Predicted Functional Partners:
SB4_08970
Ureidoglycolate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.975
SB4_08955
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.875
SB4_08950
Pyridoxal 4-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.859
SB4_08940
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.841
SB4_08390
NADH oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.817
SB4_08945
Altronate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.804
SB4_08965
Fucose permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
SB4_15455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
SB4_03450
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.727
SB4_11260
acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family.
   
  0.646
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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