STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SB4_09005Transcriptional initiation protein Tat; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)    
Predicted Functional Partners:
SB4_08995
GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.984
SB4_09010
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.968
SB4_09000
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.965
SB4_09020
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.950
SB4_09015
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the hyi family.
 
     0.946
SB4_09025
AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.912
SB4_09035
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.891
SB4_08890
Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.861
SB4_01590
Hydroxypyruvate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.714
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.713
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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