STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SB4_09080Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (107 aa)    
Predicted Functional Partners:
SB4_00410
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
cmk
Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.672
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
       0.669
SB4_03120
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.663
SB4_00360
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.633
SB4_11510
RecX family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.628
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.621
SB4_08705
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.608
SB4_00700
Septum formation initiator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.593
SB4_08140
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.580
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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