Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_09375Transcription elongation factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)    
Predicted Functional Partners:
SB4_09370
Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.746
SB4_09360
Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.688
hpf
30S ribosomal protein S30; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
 
     0.683
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
     0.646
SB4_09355
PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.640
SB4_09365
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.640
SB4_09620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.607
SB4_03890
Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.595
SB4_08190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.587
dnaQ
DNA polymerase III subunit epsilon; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
       0.582
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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