Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
SB4_09560Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)    
Predicted Functional Partners:
SB4_09550
Secreted (periplasmic)-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.959
leuS
leucyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.912
SB4_09545
DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.886
SB4_09305
Membrane protein SmpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.773
SB4_00135
Pyrrolo-quinoline quinone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.758
SB4_08070
RpsU-divergently transcribed; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.742
SB4_12565
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.739
SB4_09285
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
SB4_03120
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.734
SB4_00360
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.726
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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