Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_09815Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (382 aa)    
Predicted Functional Partners:
SB4_15315
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
SB4_09810
Asparaginase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.663
SB4_09805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.632
SB4_04870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.575
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.557
SB4_17345
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.557
SB4_14935
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.556
SB4_17310
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.549
SB4_05205
Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.533
SB4_13625
Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.525
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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