Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_10175Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (473 aa)    
Predicted Functional Partners:
SB4_00480
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.847
SB4_16095
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.807
SB4_01015
RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.789
SB4_10165
NAD(P) transhydrogenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.699
SB4_00890
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.688
SB4_10155
Pyridine nucleotide transhydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.622
SB4_13425
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.620
SB4_10150
NAD synthetase; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
       0.618
SB4_05800
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.600
SB4_00785
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.577
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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