Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_11315AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)    
Predicted Functional Partners:
SB4_11325
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.816
SB4_11320
Linalool 8-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.
     0.814
SB4_17105
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.788
SB4_11305
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.752
SB4_11310
Geraniol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.752
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.714
SB4_08725
Cadherin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.592
SB4_00865
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
    0.591
SB4_14600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.574
SB4_14615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.540
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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