Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
SB4_11520DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)    
Predicted Functional Partners:
SB4_12115
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.754
SB4_17850
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.687
SB4_11590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.628
SB4_11525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.625
SB4_13115
Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartokinase family.
     
  0.575
SB4_01190
Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.567
SB4_00070
Dihydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DapA family.
     
  0.462
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
     
  0.462
SB4_17620
GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.424
SB4_09135
DNA topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.417
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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