Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_11665Ethanolamine permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)    
Predicted Functional Partners:
SB4_11660
Ethanolamine ammonia-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.854
SB4_11655
Ethanolamine ammonia-lyase; With EutC catalyzes the formation of acetaldehyde and ammonia from ethanolamine; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.757
SB4_02625
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.720
SB4_02630
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.720
SB4_13475
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.720
SB4_11670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.563
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
   
 0.481
SB4_14835
Shikimate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.481
SB4_17105
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.435
SB4_16095
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.411
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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