Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_12295Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)    
Predicted Functional Partners:
SB4_18780
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.677
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily.
  
 0.659
SB4_06265
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.595
SB4_06300
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.595
SB4_11145
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.595
SB4_12290
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.588
SB4_12745
Hypothetical protein; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
   0.583
SB4_07770
NADP-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.557
SB4_14620
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.555
SB4_15975
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.555
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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