Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SB4_12970Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (392 aa)    
Predicted Functional Partners:
SB4_12965
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 0.998
SB4_13455
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.984
SB4_09205
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.983
SB4_01550
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.971
SB4_05830
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.965
SB4_04975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.958
SB4_13460
Multidrug transporter; MexX; AmrA; involved in resistance to antibiotics; periplasmic membrane fusion protein; functions along with MexY and OprM; part of an inducible system that appears to respond to interference with the cellular translation machinery; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.955
SB4_09210
Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 
0.917
SB4_05965
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.885
SB4_09200
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.885
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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