STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SB4_13425Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (580 aa)    
Predicted Functional Partners:
SB4_13420
Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.997
SB4_16095
Response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.988
SB4_00840
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
0.979
SB4_03730
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.920
SB4_03295
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.916
SB4_16100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.901
SB4_05840
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.898
SB4_13175
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.898
SB4_03405
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.867
SB4_05800
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.847
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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