Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SB4_13435Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)    
Predicted Functional Partners:
SB4_05925
Outer membrane family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.670
SB4_13440
Alpha-ketoglutarate permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.655
SB4_01835
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.653
SB4_04350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.609
SB4_10180
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.588
dctA
C4-dicarboxylate transporter; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.581
SB4_05305
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.571
secA
Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
    
 
 0.567
SB4_11670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.552
SB4_11190
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.549
Your Current Organism:
Sphingomonas sanguinis
NCBI taxonomy Id: 33051
Other names: 13937T, ATCC 51382, CIP 104197, DSM 13885, GIFU 2397, GIFU:2397, HAMBI 2010, IFO 13937, JCM 7514, LMG 17325, LMG:17325, NBRC 13937, S. sanguinis, Sphingomonas sanguis, strain 13937
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